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Stock JK TechBulletin board forum regarding issues with OE (original equipment) components of the Jeep JK Wrangler (Rubicon, Sahara, Unlimited and X) such as factory suspension parts, engine, transmission, body parts, interior fixtures and the on-board computer.
Driving on the highway usually does that. It seems like the doors are not flush and the wind and dirt stripping the paint off like it's getting sand blasted.
I have a simialr problem but not to the same degree.
I know i did it putting the doors back on. I now cover the area with a few pieces of tape when i install the doors.